This lab requires an AWS Cloud9 IDE. If you do not have an AWS Cloud9 IDE set up, complete the Prepartion section of the workshop
In this workshop, you will learn how to use container orchestrators like AWS Batch and deploy an architecture for genomics pipeline execution on AWS Batch.
In this lab you will run a basic pipeline for quantification of genomic features from short read data implemented with Nextflow
You will be deploying the below architecture as part of this lab:
This includes the following steps: